S2E1 - Jar She Blows!
Captain K'nuckles accidentally gets Flapjack stuck in a jar when trying to get some Candied Island candy. This leads Flapjack on a long journey in an attempt to return home, after being washed out to sea.
July 30, 2009, midnight
S2E2 - Behind the Curtain
Flapjack and Captain K'nuckles struggle to escape from the Dock Hag's house after a feeble attempt at sabotaging K'nuckles' dock tickets, only to discover that the Dock Hag has a crush on the old captain.
July 30, 2010, midnight
S2E3 - SHUT iT
After an argument involving Bubbie's tooth door, Flapjack and Captain K'nuckles decide to disguise themselves as each other for the day to see whose life is more difficult.
Aug. 6, 2009, midnight
S2E4 - Who's Moochin' Who?
When the Dock Hag bans Flapjack and K'nuckles from setting foot on the main harbor until they pay off their tickets, they take in a rich stranger in the hope he will pay them for being such kind friends. However, they rethink their idea when the stranger begins to take advantage of their hospitality.
Aug. 6, 2009, midnight
S2E5 - Over the Moon
When Flapjack and Captain K'nuckles are stranded on the moon after getting chased by Eight-Armed Willy, they discover that it could lead them to Candied Island. All they need to do is trick the moon (who, they discovered, has a mind of its own) into taking them there.
Aug. 13, 2009, midnight
S2E6 - 100 Percensus
Captain K'nuckles refuses to take a census conducted by Flapjack, due to a misunderstanding. Unfortunately, the census takers who assigned this duty to Flapjack are actually a group of pirates wanting to take over Stormalong.
Aug. 13, 2010, midnight
S2E7 - Off With His Hat
When Flapjack helps Captain K'nuckles look for his lost hat on an island filled with chimpanzees, they end up encountering a researcher living among them. With her help, they must reach the "secret meeting place": an active volcano whose crater K'nuckles must cross so he can get his hat back.
Aug. 20, 2009, midnight
S2E8 - K'nuckles and His Hilarious Problem
Flapjack tries to break Captain K'nuckles' candy addiction after he develops a severe case of "candy rot".
Aug. 20, 2009, midnight
S2E9 - Fancy Pants
K'nuckles needs to get fancy pants to get into the new VIP section of the Candy Barrel.
Aug. 27, 2009, midnight
S2E10 - Cuddle Trouble
Flapjack finds he may have a problem with cuddling after a night sleeping outside, so he tries to find the cause and a cure.
Aug. 27, 2009, midnight
S2E11 - Who's That Man in the Mirror?
When K'nuckles refuses to lose weight, he risks losing Flapjack to a real adventurer.
Sept. 10, 2009, midnight
S2E12 - Unhappy Endings
Tired of stories with happy endings K'nuckles and Flapjack go off in search of a story without one, but their imaginations quickly run wild.
Sept. 10, 2009, midnight
S2E13 - S.S. K'nuckies
Bubbie becomes jealous of K'nuckles' new boat, while unbeknownst to the trio, the boat's original owner seeks to kill Flapjack and K'nuckles.
Sept. 24, 2009, midnight
S2E14 - Candy Casanova
Flapjack keeps an eye on Candy Wife while Peppermint Larry is out of town, making Captain K'nuckles jealous.
Sept. 24, 2009, midnight
S2E15 - Down with the Ship
K'nuckles tries to prove he's a captain by visiting a sunken ship to collect his captain's papers.
Oct. 8, 2009, midnight
S2E16 - Willy! (Or Won't He?)
Flapjack has to capture Eight-Armed Willy to prove he is worthy of being a real adventurer.
Oct. 8, 2009, midnight
S2E17 - Bubbie's Tummy Ache
When Bubbie gets a stomach ache, Flapjack must go on a dangerous journey into her stomach to fix it.
Oct. 22, 2009, midnight
S2E18 - Mind the Store, Don't Look in the Drawer
Dr. Barber leaves Flapjack and K'nuckles to look after his barbershop/clinic with one important rule: they must not open a drawer. As a result, they are very curious about what is in the drawer.
Oct. 22, 2009, midnight
S2E19 - Please Retire
K'nuckles and Flapjack visit a storytelling club, where K'nuckles finds out that his own stories may be outdated.
Nov. 5, 2009, midnight
S2E20 - Under the Sea Monster
When Flapjack pulls a sea monster-related prank on K'nuckles the citizens of Stormalong banish him from the harbor by throwing him into the ocean, leaving Flapjack to try to get him back.
Nov. 5, 2009, midnight
S2E21 - Flapjack Goes To a Party
Flapjack gets invited to a birthday party, but feels embarrassed when the other kids perceive K'nuckles and Bubbie as "weirdos".
Nov. 19, 2009, midnight
S2E22 - Rye Ruv Roo
Flapjack pretends to be a dog for Lady Nicklebottoms, while K'nuckles experiences the joys of owning a dog.
Nov. 19, 2009, midnight
S2E23 - Low Tidings
Flapjack celebrates Low Tide Day and awaits his gifts from Poseidon, while K'nuckles tries to find a place to hide from the mermen for being a naughty person.
Dec. 3, 2009, midnight
S2E24 - Come Home Cap'n
Bubbie kicks K'nuckles out, and Flapjack tries to reconcile the two.
March 15, 2010, midnight
S2E25 - Fastest Man Alive
When the fat police constable (called Constable Norm in later episodes) creates the first bicycle in Stormalong Flapjack and K'nuckles find it difficult to get away with mischief, especially when the constable begins to abuse his authority and punish them severely for minor offenses.
March 15, 2010, midnight
S2E26 - Oh You Animal
Bubbie (and eventually K'nuckles) tries to rescue Flapjack from an old woman, who thinks he's a missing child.
March 18, 2010, midnight
S2E27 - The Return of Sally Syrup
Sally Syrup returns to Stormalong (much to her dismay) and Flapjack must convince her that Stormalong is not all that bad.
March 18, 2010, midnight
S2E28 - Lazy Bones
When K'nuckles wins a contest for being Stormalong's laziest man, the original owner of the title gets revenge by kidnapping Flapjack.
April 12, 2010, midnight
S2E29 - Two Old Men and a Lock Box
Flapjack and K'nuckles attempt to befriend two old men who possess a treasure chest from Candied Island.
April 12, 2010, midnight
S2E30 - Bam!
K'nuckles is bullied by a group of sailors in the Candy Barrel, and Flapjack tries to convince him he is not a wimp.
April 26, 2010, midnight
S2E31 - Lost at Land
K'nuckles and Flapjack are stranded on a strange island and are unable to find the ocean.
April 26, 2010, midnight
S2E32 - Just One Kiss
K'nuckles challenges Peppermint Larry to a game of pool to settle the ownership of Candy Wife.
May 10, 2010, midnight
S2E33 - Wishing Not so Well
K'nuckles' wish that everyone in Stormalong would disappear comes true, but he soon begins to regret his wish.
May 10, 2010, midnight
S2E34 - N Is for Navy
Flapjack joins the navy to prove K'nuckles he has a life, only to find it's not exciting as he thought it was.
May 24, 2010, midnight
S2E35 - What's Eatin' Ya, Cap'm?
K'nuckles becomes infested with termites.
May 24, 2010, midnight
S2E36 - I'm So Proud of Me
Flapjack becomes upset when an embarrassing picture of him appears in the paper.
June 7, 2010, midnight
S2E37 - A Day Without Laughter
Flapjack tries to help Lolly Poopdeck get respect when he gets tired of being a laughingstock.
June 7, 2010, midnight
S2E38 - All Hands on Deck
There are dire consequences when Flapjack switches places with a sailor.
June 21, 2010, midnight